Upon completion of MDS you will find the analysis files generated under the 800 sim files. There will be two files of data titled analysis.tab & analysisRes.tab. Analysis.tab uses root-mean square deviation to track the global movement of the carbon-alpha backbone. AnalysisRes.tab uses root-mean square fluctuation to track individual residue movement of particular amino acids. These two files allow us to visualize the trajectory data by using simple line graphs in Excel.
Analysis of Molecular Dynamics Simulation files
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